Basic Information
Locus ID:
gene_17989
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 123929200 | 123935822 | + | gene_17989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 48,786.88 Da | 37.43 | 111.95 | 0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 26 | 420 | 8.95536E-59 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 60 | 215 | 1.8E-13 | IPR011701 |
| Pfam | PF07690 | Major Facilitator Superfamily | 245 | 424 | 2.3E-12 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 60 | 425 | 2.62E-36 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 16 | 421 | 5.8E-35 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 19 | 427 | 13.185279 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 77 | 93 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 365 | 388 | 3.7E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 305 | 326 | 3.7E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 90 | 114 | 3.7E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 59 | 78 | 3.7E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021755148.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A5B7BTP3 | Putative hippocampus abundant transcript-like protein 1 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_039894 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology