Basic Information
Locus ID:
gene_17914
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Chromatin assembly factor 1 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 42063135 | 42069724 | - | gene_17914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 49,653.52 Da | 44.54 | 80.90 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 14 | 40 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 92 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 105 | 140 | 5.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 181 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 365 | 0.071 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 367 | 7.1E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 250 | 4.0E-44 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 410 | 2.9E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 101 | 140 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 92 | 7.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 369 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 41 | 0.0028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 326 | 320.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 181 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 108 | 140 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 92 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 50 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 60 | 92 | 9.54651 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 108 | 149 | 13.215325 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 395 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64630.2 | Transducin/WD40 repeat-like superfamily protein. Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. | 0 |
| RefSeq | XP_021851962.1 | chromatin assembly factor 1 subunit FAS2 [Spinacia oleracea] | 0 |
| Q9SXY1 | Chromatin assembly factor 1 subunit FAS2 OS=Arabidopsis thaliana OX=3702 GN=FAS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB9 | Chromatin assembly factor 1 subunit FAS2 OS=Spinacia oleracea OX=3562 GN=SOVF_165860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39648 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17914 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027122 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13410, Sbi_jg52440 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9405 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013412 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33742, Sgl39054 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000850, gene:ENSEOMG00000003717 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022300, CQ.Regalona.r1.6BG0023530 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30110650, pistato.v30200900 |
| Apiaceae | Apium graveolens | 1 | Ag7G02226 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G020910, scaffold007467G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713746, gene-LOC120111428 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.725.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G10713 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64630.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27690.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB06g012820.2N, BniB06g012870.2N, BniB06g012880.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1880 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1953 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21130 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.857 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014264 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27799 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.59, BH08.11, CH08.184 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614840, gene-QOZ80_8BG0642180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706580.1 |
| Poaceae | Oryza coarctata | 2 | Oco15G000360, Oco16G000470 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G009500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402693, Pt_Chr0402695 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr17G000170, Chr20G014050, Chr29G012890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G554600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045320, gene_TRIDC7BG037260 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G323200.1, TraesCS7B02G224100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb260310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51950 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22347 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1783, evm.TU.LG06.591 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g10680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1544 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17629 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17810 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12220 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.938 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007625 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15046 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23664 |
| Salicaceae | Populus euphratica | 1 | populus_peu22792 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615124 |
| Solanaceae | Solanum chilense | 1 | SOLCI002191600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003173 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10310 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0508 |
| Zosteraceae | Zostera marina | 1 | Zosma05g16200.v3.1 |