Basic Information
Locus ID:
gene_17910
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 117535625 | 117550299 | + | gene_17910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 38,202.23 Da | 46.99 | 66.50 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 50 | 135 | 1.03453E-41 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 262 | 326 | 1.81752E-17 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 262 | 329 | 3.6E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 52 | 135 | 9.6E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 48 | 142 | 6.28E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 255 | 332 | 1.83E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 246 | 334 | 1.6E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 39 | 150 | 1.6E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 45 | 135 | 4.4E-26 | - |
| SMART | SM00501 | bright_3 | 49 | 140 | 2.4E-29 | IPR001606 |
| SMART | SM00398 | hmgende2 | 261 | 330 | 6.4E-14 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 48 | 139 | 26.326548 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 262 | 329 | 13.402176 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 265 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_039172007.1 | high mobility group B protein 10 [Eucalyptus grandis] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1AL86 | high mobility group B protein 10 OS=Herrania umbratica OX=108875 GN=LOC110418840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology