Basic Information
Locus ID:
gene_17874
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
EBF2
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 41128692 | 41132376 | - | gene_17874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 72,348.77 Da | 40.25 | 106.83 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 554 | 574 | 0.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 207 | 230 | 0.055 | IPR001611 |
| Pfam | PF00646 | F-box domain | 65 | 105 | 3.5E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 527 | 549 | 0.56 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 164 | 342 | 9.02E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 315 | 634 | 6.67E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 62 | 103 | 1.7E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 246 | 2.6E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 433 | 638 | 6.5E-29 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 59 | 106 | 7.6E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 247 | 432 | 4.3E-34 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 526 | 551 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 578 | 603 | 400.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 339 | 363 | 4.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 364 | 389 | 0.052 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 232 | 2.1E-8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 415 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 470 | 495 | 0.11 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 233 | 258 | 3.1E-4 | IPR006553 |
| SMART | SM00256 | fbox_2 | 69 | 110 | 2.3E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 259 | 284 | 0.31 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 499 | 524 | 5.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 444 | 469 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 181 | 206 | 1.9E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 552 | 576 | 0.0026 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 63 | 113 | 8.649649 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_021769345.1 | EIN3-binding F-box protein 1-like [Chenopodium quinoa] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ENK7 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology