Basic Information
Locus ID:
gene_17866
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 40954259 | 40963132 | - | gene_17866 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 72,638.27 Da | 39.14 | 83.37 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 479 | 577 | 3.03367E-5 | - |
| Pfam | PF01472 | PUA domain | 234 | 271 | 5.1E-6 | IPR002478 |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 520 | 655 | 1.5E-19 | IPR001678 |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 364 | 432 | 3.9E-16 | IPR001678 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 231 | 334 | 5.39E-10 | IPR015947 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 118 | 655 | 2.43E-44 | IPR029063 |
| Gene3D | G3DSA:2.30.130.10 | PUA domain | 215 | 290 | 2.6E-8 | IPR036974 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 295 | 656 | 1.6E-63 | - |
| ProSiteProfiles | PS51686 | SAM-dependent MTase RsmB/NOP-type domain profile. | 285 | 658 | 35.232807 | IPR001678 |
| ProSiteProfiles | PS50890 | PUA domain profile. | 232 | 339 | 12.908617 | - |
| ProSitePatterns | PS01153 | NOL1/NOP2/sun family signature. | 522 | 533 | - | IPR018314 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 375 | 385 | 2.2E-12 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 640 | 657 | 2.2E-12 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 571 | 587 | 2.2E-12 | IPR023267 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 495 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06560.1 | NOL1/NOP2/sun family protein. | 0 |
| RefSeq | XP_010696022.1 | rRNA (cytosine-C(5))-methyltransferase NOP2C isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84MA1 | rRNA (cytosine-C(5))-methyltransferase NOP2C OS=Arabidopsis thaliana OX=3702 GN=NOP2C PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QSV1 | SAM_MT_RSMB_NOP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_150590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17866 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034686 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030160 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg22232 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16159 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008761 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62704, Sgl67324, Sgl67538, Sgl67542 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016961, gene:ENSEOMG00000023418 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0021010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013290 |
| Apiaceae | Apium graveolens | 1 | Ag2G01648 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G005940, COCNU_06G005950, COCNU_06G005960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707377 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1716.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G11115, FtriNA29572 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G06560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007146m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g001920.2N, BniB06g044070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2190 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2269 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g10150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0036s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1249 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001395 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1302, BH08.1289, CH08.1397 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0627780, gene-QOZ80_8BG0656340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0719480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032131 |
| Poaceae | Oryza coarctata | 2 | Oco15G007080, Oco16G006830 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g27824.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G119600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703986, Pt_Chr0705444 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G007720, Chr29G007100 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G637100, Tel7E01G637200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG052450, gene_TRIDC7BG044900 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G375500.1, TraesCS7B02G277100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb170650_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43220 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22870 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2516, evm.TU.LG17.1559 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g00150, gene.Posoc04g08660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1248 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11718 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8029 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11204 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.728 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9816 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19939 |
| Salicaceae | Populus euphratica | 1 | populus_peu14994 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616621 |
| Solanaceae | Solanum chilense | 1 | SOLCI006140700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026500 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7321 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1533 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00610.v3.1 |