Basic Information
Locus ID:
gene_17837
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
SPOC domain Transcription elongation factor S-II protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 40337563 | 40353303 | - | gene_17837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 163,987.05 Da | 53.83 | 75.48 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 355 | 397 | 1.12301E-19 | - |
| Pfam | PF07744 | SPOC domain | 1097 | 1242 | 2.2E-15 | IPR012921 |
| Pfam | PF13639 | Ring finger domain | 356 | 397 | 8.5E-12 | IPR001841 |
| Pfam | PF07500 | Transcription factor S-II (TFIIS), central domain | 809 | 905 | 8.2E-28 | IPR003618 |
| SUPERFAMILY | SSF46942 | Elongation factor TFIIS domain 2 | 792 | 894 | 4.71E-26 | IPR036575 |
| SUPERFAMILY | SSF57850 | RING/U-box | 347 | 401 | 4.18E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 402 | 6.3E-19 | IPR013083 |
| Gene3D | G3DSA:1.10.472.30 | - | 804 | 893 | 2.1E-25 | IPR036575 |
| SMART | SM00510 | mid_6 | 800 | 901 | 2.5E-31 | IPR003618 |
| SMART | SM00184 | ring_2 | 356 | 396 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 356 | 397 | 12.504031 | IPR001841 |
| ProSiteProfiles | PS51321 | TFIIS central domain profile. | 803 | 918 | 32.344696 | IPR003618 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1331 | 1414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1452 | 1492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1070 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 72 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010670761.2 | uncharacterized protein LOC104887737 [Beta vulgaris subsp. vulgaris] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QHC2 | TFIIS central domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_179250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36767, jg7848 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17837 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031908 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30298, Sbi_jg43715 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18194 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025554 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl65783, Sgl65798, Sgl70137, Sgl70138 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012943, gene:ENSEOMG00000019755 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001730, CQ.Regalona.r1.2BG0002760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253040 |
| Apiaceae | Apium graveolens | 1 | Ag7G02491 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G016250, COCNU_03G016260 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720849, gene-LOC120111517 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1897.V1.1, AsparagusV1_07.3852.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G12813, Ftri7G21685 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G25640.1, AT3G29639.1, AT5G11430.1, AT5G25520.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000617m.g.v1.0, Thhalv10012648m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g05210.v2.2, Sp6g32170.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g017740.2N, BniB02g050640.2N, BniB02g078040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2263 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2461 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g10750, gene.Cymno06g04570, gene.Cymno07g06100 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0753s00006.v1.0, Dusal.0753s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g35610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-57 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1385 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036163 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08526, Lb2G08538 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2182, AH07.794, BH07.4023, BH07.926, CH06.2211 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0105800, gene-QOZ80_2BG0159190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0547330.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019646, gene-QYE76_034866 |
| Poaceae | Oryza coarctata | 4 | Oco03G005510, Oco04G005590, Oco11G012090, Oco12G012250 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g11780.1, LOC_Os06g39480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G081700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201012, Pt_Chr0400607 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G022590, Chr06G032750, Chr10G017380, Chr11G005140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G133000, Tel7E01G603400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG006540, gene_TRIDC6BG009220 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1B02G476000.1, TraesCS6A02G052900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb205470_P001, Zm00001eb240410_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-33414, nbis-gene-41103, nbis-gene-44021 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12426, Zma_g15176, Zma_g33008, Zma_g33009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.367, evm.TU.LG26.669 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g18140, gene.Posoc08g10160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.807 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13678 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11901 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9053, nbisL1-mrna-9054 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.132 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003890 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3814 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7910 |
| Salicaceae | Populus euphratica | 3 | populus_peu04837, populus_peu04838, populus_peu12822 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635710 |
| Solanaceae | Solanum chilense | 1 | SOLCI004490700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028502 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17243 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0428 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05010.v3.1, Zosma04g08390.v3.1 |