Basic Information
Locus ID:
gene_17830
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 40222734 | 40229291 | - | gene_17830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 34,683.62 Da | 47.74 | 59.60 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 189 | 233 | 3.97767E-14 | - |
| Pfam | PF14599 | Zinc-ribbon | 237 | 295 | 1.5E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 189 | 232 | 1.2E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 54 | 135 | 1.2E-19 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 238 | 4.71E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 126 | 183 | 3.01E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 51 | 125 | 2.09E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 261 | 299 | 2.5E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 235 | 1.4E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 232 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 125 | 189 | 34.326729 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 233 | 12.223724 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 47 | 123 | 25.28087 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_028107941.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Camellia sinensis] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A892 | E3 ubiquitin-protein ligase MIEL1-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology