Basic Information
Locus ID:
gene_17794
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 39375835 | 39401736 | - | gene_17794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 133,186.81 Da | 52.66 | 92.72 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 873 | 1165 | 1.014E-46 | - |
| CDD | cd00200 | WD40 | 265 | 557 | 2.12148E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 299 | 7.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 918 | 953 | 0.027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 873 | 907 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1083 | 1122 | 0.064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 387 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 514 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 557 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1127 | 1165 | 4.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 957 | 995 | 4.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 867 | 1165 | 3.66E-65 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 7.94E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 853 | 1004 | 1.3E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1005 | 1187 | 3.3E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 574 | 5.2E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 521 | 5.0E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 869 | 908 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1081 | 1123 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1039 | 1077 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 5.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1126 | 1166 | 1.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 956 | 995 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 8.6E-11 | IPR001680 |
| SMART | SM00668 | ctlh | 704 | 761 | 1.7E-4 | IPR006595 |
| SMART | SM00668 | ctlh | 96 | 153 | 2.3E-4 | IPR006595 |
| SMART | SM00667 | Lish | 63 | 95 | 1.1 | IPR006594 |
| SMART | SM00667 | Lish | 671 | 703 | 0.061 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 105 | 153 | 9.893191 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 962 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 63 | 95 | 8.088951 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 559 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 671 | 703 | 8.678602 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 559 | 11.022865 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 704 | 761 | 9.753834 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 876 | 909 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1133 | 1167 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1133 | 1167 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 876 | 909 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 958 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 963 | 996 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 362 | 389 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 963 | 996 | 8.887423 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 982 | 996 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 895 | 909 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 374 | 388 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1153 | 1167 | 4.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 982 | 996 | 4.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 4.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021843614.1 | WD repeat-containing protein 26-like [Spinacia oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8ZJG2 | Uncharacterized protein OS=Salvia splendens OX=180675 GN=SASPL_129956 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology