Basic Information
Locus ID:
gene_17756
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 38543988 | 38547761 | - | gene_17756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.40 | 63,959.39 Da | 41.67 | 95.96 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 3.0E-25 | IPR041101 |
| Pfam | PF18511 | F-box | 2 | 42 | 1.8E-16 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 63 | 531 | 3.53E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.3E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 574 | 1.6E-177 | IPR032675 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0021 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 68.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 8.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 680.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 320.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 2.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010682986.2 | protein AUXIN SIGNALING F-BOX 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R4P9 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_107140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology