Basic Information
Locus ID:
gene_17742
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
May serve as docking site to facilitate the association of other proteins to the plasma membrane
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 38202455 | 38220361 | - | gene_17742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 33,537.40 Da | 47.57 | 90.43 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01814 | Ubl_MUBs_plant | 193 | 279 | 1.7634E-46 | - |
| CDD | cd03419 | GRX_GRXh_1_2_like | 36 | 118 | 1.42844E-32 | - |
| Pfam | PF13881 | Ubiquitin-2 like Rad60 SUMO-like | 193 | 303 | 2.5E-41 | IPR039540 |
| Pfam | PF00462 | Glutaredoxin | 37 | 100 | 5.5E-10 | IPR002109 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 188 | 283 | 6.9E-25 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 25 | 123 | 6.47E-21 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 24 | 144 | 2.6E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 181 | 287 | 3.1E-42 | - |
| TIGRFAM | TIGR02189 | GlrX-like_plant: glutaredoxin-like family | 28 | 125 | 2.1E-40 | IPR011905 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 25 | 126 | 20.570684 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 194 | 262 | 9.852578 | IPR000626 |
| Coils | Coil | Coil | 277 | 297 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26980.1 | membrane-anchored ubiquitin-fold protein 4 precursor. | 0 |
| RefSeq | XP_021850367.1 | membrane-anchored ubiquitin-fold protein 4-like [Spinacia oleracea] | 0 |
| Q9LSD8 | Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana OX=3702 GN=MUB4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5C3T7 | Ubiquitin-like domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004478 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology