Basic Information
Locus ID:
gene_17611
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
APO protein 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 34835606 | 34840449 | - | gene_17611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 50,835.74 Da | 52.56 | 93.54 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 342 | 412 | 4.85808E-7 | - |
| Pfam | PF05634 | APO RNA-binding | 40 | 177 | 5.7E-39 | IPR023342 |
| Pfam | PF05634 | APO RNA-binding | 200 | 275 | 4.3E-14 | IPR023342 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 336 | 417 | 3.15E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 339 | 413 | 1.4E-9 | - |
| ProSiteProfiles | PS51499 | APO domain profile. | 97 | 181 | 18.796247 | IPR023342 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 340 | 411 | 9.6566 | IPR000626 |
| ProSiteProfiles | PS51499 | APO domain profile. | 231 | 316 | 10.817414 | IPR023342 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21740.1 | Arabidopsis thaliana protein of unknown function (DUF794). ACCUMULATION OF PHOTOSYSTEM ONE 4 | 0 |
| RefSeq | XP_021741090.1 | APO protein 4, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q9LSZ0 | APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9CMH1 | APO protein 4, mitochondrial OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10616 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17611 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008882 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028630 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg18299 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4638 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017452 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23448, Sgl28575, Sgl28749 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011518, gene:ENSEOMG00000030671 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0022030, CQ.Regalona.r1.4AG0023380 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30018670, pistato.v30282200 |
| Apiaceae | Apium graveolens | 1 | Ag6G02518 |
| Arecaceae | Cocos nucifera | 1 | contig69275422G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696302 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1465.V1.1, AsparagusV1_08.2060.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G14034 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g041380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2448 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2534 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05910 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g20870, gene.Thate05g25770 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2046, evm.TU.LG05.1620 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026742 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07813, Lb5G28326 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2367, BH09.2572, CH09.2806 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0303110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0198340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046449 |
| Poaceae | Oryza coarctata | 2 | Oco07G016600, Oco08G016020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g53612.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G238400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301042 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004950, Chr23G004980, Chr26G016090, Chr30G002690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G801000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG067090, gene_TRIDC2BG072300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G474900.1, TraesCS2B02G498500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb071730_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.323, evm.TU.LG25.988 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g15880, gene.Posoc05g06350, gene.Posoc10g01970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1493, evm.TU.Scaffold_9_RagTag.1356 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11983, nbisL1-mrna-20437, nbisL1-mrna-20463 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1169 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11002 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.831, evm.TU.utg000006l.856 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009947, Maker00013222 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10385, nbisL1-mrna-1227 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15446, nbisL1-mrna-4732 |
| Salicaceae | Populus euphratica | 1 | populus_peu24075 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627983 |
| Solanaceae | Solanum chilense | 1 | SOLCI003907800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015724 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10475 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0643 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31960.v3.1 |