Basic Information
Locus ID:
gene_17570
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 33714956 | 33721974 | - | gene_17570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 79,776.01 Da | 43.96 | 64.80 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 616 | 657 | 2.01E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 599 | 671 | 1.0E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 601 | 644 | 0.0013 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 631 | 653 | 10.675542 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 631 | 645 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 562 | - | - |
| Coils | Coil | Coil | 523 | 543 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14900.1 | 0 | |
| RefSeq | XP_010688244.2 | uncharacterized protein LOC104902238 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C9CQW4 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21186 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17570 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014569 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25000, Sbi_jg8853 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19749 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007784 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42238, Sgl47015 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032811, gene:ENSEOMG00000045417 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019900, CQ.Regalona.r1.8BG0022460 |
| Apiaceae | Apium graveolens | 1 | Ag11G03186 |
| Arecaceae | Cocos nucifera | 2 | scaffold007826G000040, scaffold007826G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699087 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1061.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G13520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022322m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g050130.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04450 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1446 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00019042, Pov_00019044, Pov_00019045 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1445, BH09.1626, CH09.1790 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311950, gene-QOZ80_4BG0343280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178590.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G009710, Oco08G009510 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g42030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G148600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302238, Pt_Chr0302275 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G009630, Chr25G010070, Chr26G010120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G617700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051630, gene_TRIDC2BG054490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G356000.1, TraesCS2B02G372100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5172 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21549 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1781, evm.TU.LG14.97 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19877 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6410 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13585 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.27 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22080 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12353 |
| Salicaceae | Populus euphratica | 1 | populus_peu00602 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618151 |
| Solanaceae | Solanum chilense | 1 | SOLCI004077200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026394 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29375_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0093 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18900.v3.1 |