HalophFGD

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Basic Information
Locus ID: gene_17557
Species & Taxonomic ID: Reaumuria soongarica & 194564
Genome Assembly: GCA_040143545.1
Description: Protein translocase subunit
Maps and Mapping Data
Chromosome Start End Strand ID
chr09 63533326 63589330 + gene_17557
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.25 107,153.21 Da 43.44 92.74 -0.30
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd17928 DEXDc_SecA 126 480 2.18905E-133 -
CDD cd18803 SF2_C_secA 486 747 3.29336E-68 IPR044722
Pfam PF01043 SecA preprotein cross-linking domain 318 424 1.0E-33 IPR011130
Pfam PF07517 SecA DEAD-like domain 93 468 2.8E-124 IPR011115
Pfam PF07516 SecA Wing and Scaffold domain 855 927 7.5E-23 IPR011116
Pfam PF07516 SecA Wing and Scaffold domain 774 851 4.0E-20 IPR011116
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 482 771 1.07E-49 IPR027417
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 312 434 3.27E-42 IPR036670
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 92 481 5.82E-74 IPR027417
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 777 935 5.75E-48 IPR036266
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 853 933 8.2E-26 -
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 778 852 2.5E-17 -
Gene3D G3DSA:3.40.50.300 - 483 776 4.3E-85 IPR027417
Gene3D G3DSA:3.40.50.300 - 104 481 5.6E-173 IPR027417
Gene3D G3DSA:3.90.1440.10 - 314 434 5.6E-173 -
SMART SM00957 SecA_DEAD_2 90 468 1.9E-253 IPR011115
SMART SM00958 SecA_PP_bind_2 313 424 1.1E-55 IPR011130
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 112 852 0.0 IPR000185
ProSiteProfiles PS51196 SecA family profile. 87 777 155.689804 IPR014018
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 332 17.261751 IPR014001
ProSitePatterns PS01312 SecA family signature. 568 583 - IPR020937
PRINTS PR00906 SecA protein signature 148 172 7.0E-72 IPR000185
PRINTS PR00906 SecA protein signature 405 427 7.0E-72 IPR000185
PRINTS PR00906 SecA protein signature 479 492 7.0E-72 IPR000185
PRINTS PR00906 SecA protein signature 186 200 7.0E-72 IPR000185
PRINTS PR00906 SecA protein signature 255 275 7.0E-72 IPR000185
PRINTS PR00906 SecA protein signature 442 459 7.0E-72 IPR000185
PRINTS PR00906 SecA protein signature 202 212 7.0E-72 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 89 930 19.041647 IPR000185
MobiDBLite mobidb-lite consensus disorder prediction 717 737 - -
MobiDBLite mobidb-lite consensus disorder prediction 717 731 - -
Coils Coil Coil 98 118 - -
Gene Ontology
Biological Process:
GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)
Molecular Function:
GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G01800.1 Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. 0
RefSeq XP_008343221.1 protein translocase subunit SecA, chloroplastic [Malus domestica] 0
Swiss-Prot Q36795 Protein translocase subunit SecA, chloroplastic OS=Spinacia oleracea OX=3562 GN=secA PE=1 SV=1 0
TrEMBL A0A444XIN8 Protein translocase subunit SecA OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096120 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.