Basic Information
Locus ID:
gene_17551
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ordered Locus Names sll0103
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 33074443 | 33083844 | - | gene_17551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 62,887.96 Da | 42.63 | 88.65 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 438 | 486 | 7.2E-8 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 56 | 215 | 1.6E-18 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 53 | 215 | 1.22E-24 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 56 | 224 | 5.1E-30 | IPR036465 |
| SMART | SM00327 | VWA_4 | 54 | 226 | 2.0E-13 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 56 | 225 | 17.244234 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 563 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_002524155.1 | E3 ubiquitin-protein ligase WAV3 [Ricinus communis] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5D053 | von Willebrand factor, type A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_108790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology