Basic Information
Locus ID:
gene_17422
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 27320302 | 27323517 | - | gene_17422 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 54,193.86 Da | 41.55 | 90.60 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 361 | 431 | 1.2E-18 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 24 | 343 | 1.8E-83 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 24 | 343 | 3.17E-88 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 23 | 350 | 1.0E-116 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 354 | 452 | 1.5E-10 | - |
| SMART | SM00768 | X8_cls | 360 | 445 | 6.0E-47 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 258 | 271 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66250.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_010670126.2 | glucan endo-1,3-beta-glucosidase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C7U5 | Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66250 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9DBL6 | Glucan endo-1,3-beta-D-glucosidase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology