Basic Information
Locus ID:
gene_17368
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 23240632 | 23292308 | - | gene_17368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 249,437.38 Da | 50.01 | 93.50 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 2055 | 2165 | 8.44421E-32 | - |
| CDD | cd15489 | PHD_SF | 657 | 702 | 8.46036E-8 | - |
| Pfam | PF12765 | HEAT repeat associated with sister chromatid cohesion | 855 | 896 | 9.2E-13 | IPR026003 |
| Pfam | PF12830 | Sister chromatid cohesion C-terminus | 1344 | 1541 | 3.4E-52 | IPR024986 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2061 | 2195 | 5.5E-25 | IPR000477 |
| Pfam | PF00628 | PHD-finger | 657 | 704 | 2.7E-7 | IPR019787 |
| SUPERFAMILY | SSF48371 | ARM repeat | 604 | 1437 | 3.65E-34 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 643 | 713 | 1.8E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 831 | 1303 | 3.9E-8 | IPR011989 |
| SMART | SM00249 | PHD_3 | 657 | 703 | 2.1E-7 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 655 | 705 | 8.8403 | IPR019787 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 658 | 702 | 8.609239 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 658 | 702 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1736 | 1771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2189 | 2237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2198 | 2212 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15540.1 | PHD finger family protein. Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. | 0 |
| RefSeq | XP_021770922.1 | sister chromatid cohesion protein SCC2-like isoform X1 [Chenopodium quinoa] | 0 |
| A5HEI1 | Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BED0 | Sister chromatid cohesion protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_2g046400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17368 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032989 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29679, Sbi_jg43201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18692 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004445, GOSA_00004446 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl66502, Sgl66504, Sgl70833, Sgl70835 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015478, gene:ENSEOMG00000019779 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0007340, CQ.Regalona.r1.2BG0008580 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30193290, pistato.v30193610 |
| Apiaceae | Apium graveolens | 1 | Ag5G00099 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G016210, COCNU_14G011040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704462 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2056.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G22167 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28560.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g047370.2N, BniB05g023210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0398 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0349 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g02230 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0594s00003.v1.0, Dusal.4436s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39530 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.280 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028041 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01388 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.62, BH03.68, CH03.86 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0552040, gene-QOZ80_7BG0583020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0157090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043148 |
| Poaceae | Oryza coarctata | 2 | Oco13G000450, Oco14G000410 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g01940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G006600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303326 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G002420, Chr28G000370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G479500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG036880, gene_TRIDC2BG040920 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G260400.1, TraesCS2B02G281600.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb026760_P001, Zm00001eb118180_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52680 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4669 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1247, evm.TU.LG25.73 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1719 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2173, nbisL1-mrna-2176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10585 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2911 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.194 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002122 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12171 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18228 |
| Salicaceae | Populus euphratica | 2 | populus_peu09354, populus_peu25177 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618092 |
| Solanaceae | Solanum chilense | 1 | SOLCI005742200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014471 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9539 |
| Tamaricaceae | Tamarix chinensis | 2 | TC12G0332, TC12G0333 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23430.v3.1 |