Basic Information
Locus ID:
gene_17278
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 142824089 | 142839834 | - | gene_17278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 40,764.13 Da | 32.26 | 93.27 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 152 | 223 | 8.4E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 337 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 40 | 332 | 1.1E-31 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 345 | 2.3E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 259 | 296 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 128 | 166 | 0.57 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 339 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 208 | 2.1 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_028095485.1 | SEC12-like protein 2 [Camellia sinensis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5B6ZBN3 | Putative SEC12-like protein 2 OS=Davidia involucrata OX=16924 GN=Din_011188 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology