Basic Information
Locus ID:
gene_17174
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 137215350 | 137224936 | - | gene_17174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 125,604.78 Da | 35.67 | 83.43 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 915 | 948 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 482 | 516 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 912 | 1106 | 2.82E-13 | IPR011044 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 334 | 563 | 1.44E-21 | - |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 503 | 965 | 3.53E-37 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 740 | 965 | 1.7E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 331 | 436 | 6.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 966 | 1108 | 9.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 456 | 702 | 5.5E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 608 | 648 | 3.3 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.9E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1063 | 1095 | 190.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.2E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 998 | 1040 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 866 | 906 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 909 | 948 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 605 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 863 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 559 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 516 | 5.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 916 | 951 | 10.311051 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.727464 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 626 | 657 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 388 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 916 | 957 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 482 | 518 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.818093 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 503 | 517 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.2 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021772817.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology