Basic Information
Locus ID:
gene_17085
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
O-acetyl-ADP-ribose deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 12281347 | 12285492 | - | gene_17085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 31,591.44 Da | 35.50 | 82.03 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02908 | Macro_OAADPr_deacetylase | 104 | 267 | 2.27666E-88 | - |
| Pfam | PF01661 | Macro domain | 124 | 241 | 3.2E-40 | IPR002589 |
| SUPERFAMILY | SSF52949 | Macro domain-like | 103 | 267 | 1.24E-54 | IPR043472 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 76 | 270 | 7.3E-67 | IPR043472 |
| SMART | SM00506 | YBR022w_8 | 103 | 241 | 1.7E-52 | IPR002589 |
| ProSiteProfiles | PS51154 | Macro domain profile. | 91 | 273 | 27.835772 | IPR002589 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40600.1 | appr-1-p processing enzyme family protein. | 0 |
| RefSeq | XP_010670626.1 | macro domain-containing protein VPA0103 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8P5Z8 | Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC3184 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7C8YWG7 | RNA-directed RNA polymerase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14196, jg14197, jg3108, jg6838 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17085 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032082 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g042690 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg30145, Sbi_jg32514, Sbi_jg43591 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004070 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66058, Sgl70374 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016050, gene:ENSEOMG00000017746 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0002740, CQ.Regalona.r1.2BG0003940 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30177770, pistato.v30251310 |
| Apiaceae | Apium graveolens | 1 | Ag7G00269 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G012700, COCNU_16G005750 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702127, gene-LOC103720404 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.548.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G03304 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40600.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017560m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g22920.v2.2, Sp4g22930.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g004750.2N, BniB06g000210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0040 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0043 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0622s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g11410, gene.Thate08g11420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011627 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02535, Lb1G02547 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3725, BH01.4076, CH01.4337 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0247420, gene-QOZ80_3BG0280820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0378540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068080 |
| Poaceae | Oryza coarctata | 2 | Oco05G012980, Oco06G013490 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g21830.1, LOC_Os06g34540.1, LOC_Os08g04480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G362200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102644, Pt_Chr0102649 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G007810, Chr07G001150, Chr10G008810, Chr12G009840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G308900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG018600, gene_TRIDC4BG030740 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G135800.1, TraesCS4B02G169200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb016110_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1656 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1252 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.61, evm.TU.LG17.55 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g12930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.884 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27457, nbisL1-mrna-27458 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1512 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.565 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001156 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14339 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19360 |
| Salicaceae | Populus euphratica | 1 | populus_peu16374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640442 |
| Solanaceae | Solanum chilense | 1 | SOLCI005777100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020959 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13781 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0563 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05260.v3.1 |