Basic Information
Locus ID:
gene_17015
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Taxadien-5-alpha-ol
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 10807843 | 10819013 | - | gene_17015 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 87,471.49 Da | 46.89 | 71.57 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 484 | 541 | 2.09924E-19 | IPR001471 |
| Pfam | PF02458 | Transferase family | 11 | 426 | 1.6E-69 | IPR003480 |
| Pfam | PF00847 | AP2 domain | 484 | 532 | 3.8E-12 | IPR001471 |
| SUPERFAMILY | SSF52777 | CoA-dependent acyltransferases | 62 | 193 | 1.78E-5 | - |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 484 | 542 | 3.2E-20 | IPR016177 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 483 | 541 | 4.7E-24 | IPR036955 |
| Gene3D | G3DSA:3.30.559.10 | - | 239 | 426 | 8.4E-39 | IPR023213 |
| Gene3D | G3DSA:3.30.559.10 | - | 10 | 217 | 3.2E-50 | IPR023213 |
| SMART | SM00380 | rav1_2 | 484 | 547 | 2.0E-38 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 484 | 541 | 22.273279 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 507 | 523 | 1.2E-9 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 485 | 496 | 1.2E-9 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 471 | - | - |
| Coils | Coil | Coil | 671 | 716 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40230.1 | HXXXD-type acyl-transferase family protein. | 0 |
| RefSeq | XP_021841628.1 | omega-hydroxypalmitate O-feruloyl transferase [Spinacia oleracea] | 0 |
| P0DO25 | Alcohol acyltransferase 9 OS=Actinidia deliciosa OX=3627 GN=AT9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R4I6 | Omega-hydroxypalmitate O-feruloyl transferase (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_112830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10042, jg11848, jg22904, jg2568 |
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_17015, gene_20694, gene_20768, gene_23104, gene_25648 ... |
| Amaranthaceae | Atriplex hortensis | 2 | Ah023446, Ah035350 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g006980, BVRB_2g023460 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21467, Sbi_jg22350, Sbi_jg28768, Sbi_jg3185 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16277, Seu_jg6731 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000041, GOSA_00016480 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl11501, Sgl11573, Sgl16946, Sgl17070, Sgl62824, Sgl67439 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000016173, gene:ENSEOMG00000017776 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0008640, CQ.Regalona.r1.1AG0008660 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046860 |
| Apiaceae | Apium graveolens | 3 | Ag10G01299, Ag2G02203, Ag5G01431 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703758 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3409.V1.1, AsparagusV1_04.3410.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G13547, Ftri17G23164 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G27620.1, AT2G40230.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007633m.g.v1.0, Thhalv10016665m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g23840.v2.2, Sp4g22570.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g005130.2N, BniB03g017570.2N, BniB04g041910.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0101, Ceq03G0996 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0112, Cgl03G1079 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g08640, gene.Cymno11g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10916 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1898, evm.TU.LG06.615 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002500, Pov_00040564 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22440 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1094, BH02.1016, CH02.1124 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006350, gene-QOZ80_1BG0055070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049633 |
| Poaceae | Oryza coarctata | 3 | Oco01G000290, Oco02G000280, Oco02G011030 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01520.1, LOC_Os01g28474.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G094700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206635, Pt_Chr0206746 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025470, Chr03G002650, Chr05G003210, Chr08G002400 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G188700, Tel3E01G142200, Tel7E01G065600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG009530, gene_TRIDC2BG011620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G086300.1, TraesCS2B02G100500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126880_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-32357, nbis-gene-7201, nbis-gene-7202 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7460, Zma_g9803 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1695, evm.TU.LG05.146, evm.TU.LG10.1182 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03400 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60352.1, evm.TU.Scaffold_4_RagTag.935 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19031, nbisL1-mrna-25888, nbisL1-mrna-9048 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3301, nbisL1-mrna-7738 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1467, nbisL1-mrna-15354 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.227, evm.TU.utg000018l.431 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002783 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17497, nbisL1-mrna-3317 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11148, nbisL1-mrna-9274 |
| Salicaceae | Populus euphratica | 5 | populus_peu06575, populus_peu15257, populus_peu20453 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609031, gene-LOC132628055 |
| Solanaceae | Solanum chilense | 2 | SOLCI001448500, SOLCI006081600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016278, gene-LOC107021276 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25601_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1614 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06550.v3.1 |