Basic Information
Locus ID:
gene_16994
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Pleckstrin homology domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 10192242 | 10198227 | - | gene_16994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 43,084.40 Da | 36.76 | 81.52 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13276 | PH_AtPH1 | 39 | 141 | 3.65929E-62 | - |
| Pfam | PF07734 | F-box associated | 238 | 352 | 8.5E-7 | IPR006527 |
| Pfam | PF00169 | PH domain | 38 | 133 | 3.1E-19 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 37 | 139 | 7.61E-28 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 35 | 141 | 5.9E-28 | IPR011993 |
| SMART | SM00233 | PH_update | 37 | 137 | 2.6E-21 | IPR001849 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 203 | 359 | 8.9E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 170 | 221 | 8.676143 | IPR001810 |
| ProSiteProfiles | PS50003 | PH domain profile. | 36 | 135 | 18.2047 | IPR001849 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05710.1 | Pleckstrin homology (PH) domain superfamily protein. | 0 |
| RefSeq | XP_010689844.1 | pleckstrin homology domain-containing protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ST43 | Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PH1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RMY1 | PH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_048510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14979, gene_14980, gene_15000, gene_16994, gene_2093 ... |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003124, Ah012204, Ah031133, Ah031136 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26525, Sbi_jg26526, Sbi_jg29415, Sbi_jg34037 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15056, Seu_jg6323 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00000790, GOSA_00000791, GOSA_00000792, GOSA_00011322 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl12017, Sgl15992, Sgl31878, Sgl37156, Sgl46157, Sgl46158 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000022421, gene:ENSEOMG00000034528 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0000690, CQ.Regalona.r1.2BG0028260 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.202 |