Basic Information
Locus ID:
gene_1699
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 44573015 | 44587475 | - | gene_1699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 146,397.56 Da | 57.96 | 76.31 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1229 | 1270 | 1.37117E-24 | - |
| CDD | cd01989 | STK_N | 80 | 233 | 8.74019E-48 | - |
| CDD | cd01989 | STK_N | 489 | 642 | 1.26619E-43 | - |
| Pfam | PF00069 | Protein kinase domain | 944 | 1195 | 4.2E-43 | IPR000719 |
| Pfam | PF04564 | U-box domain | 1225 | 1296 | 7.5E-20 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 488 | 617 | 6.78E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1223 | 1295 | 2.83E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 98 | 208 | 2.85E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 916 | 1204 | 3.78E-68 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 487 | 640 | 9.5E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 924 | 1011 | 6.4E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1012 | 1219 | 6.6E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1224 | 1298 | 8.4E-29 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 71 | 222 | 1.4E-8 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 1228 | 1291 | 3.1E-29 | IPR003613 |
| SMART | SM00220 | serkin_6 | 939 | 1207 | 2.9E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 939 | 1208 | 35.113815 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1224 | 1298 | 38.392105 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 945 | 966 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1057 | 1069 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| Coils | Coil | Coil | 814 | 840 | - | - |
| Coils | Coil | Coil | 398 | 432 | - | - |
| Coils | Coil | Coil | 855 | 910 | - | - |
| Coils | Coil | Coil | 792 | 812 | - | - |
| Coils | Coil | Coil | 353 | 373 | - | - |
| Coils | Coil | Coil | 764 | 788 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021767019.1 | U-box domain-containing protein 33-like [Chenopodium quinoa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology