Basic Information
Locus ID:
gene_1697
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 85349255 | 85353364 | - | gene_1697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 68,791.45 Da | 33.91 | 64.56 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 266 | 396 | 8.34324E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 152 | 6.66518E-49 | IPR033734 |
| CDD | cd09612 | Jacalin | 481 | 611 | 3.77356E-41 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 153 | 4.3E-33 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 480 | 611 | 2.1E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 266 | 397 | 1.0E-27 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 469 | 610 | 1.31E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 255 | 396 | 3.27E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 153 | 1.96E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 3 | 151 | 5.7E-59 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 243 | 397 | 2.3E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 462 | 611 | 1.5E-52 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 4.1E-42 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 480 | 612 | 4.8E-41 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 266 | 398 | 4.2E-35 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 469 | 612 | 49.829628 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 255 | 398 | 48.976124 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 52.483944 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 223 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_048495353.1 | jacalin-related lectin 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9IGY5 | Jacalin-related lectin 3-like OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51386 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology