Basic Information
Locus ID:
gene_16942
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 9333711 | 9336602 | - | gene_16942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 17,467.39 Da | 68.17 | 70.70 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 11 | 149 | 9.21544E-64 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 148 | 5.5E-50 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 153 | 2.62E-59 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 3 | 155 | 1.2E-61 | IPR016135 |
| SMART | SM00212 | ubc_7 | 10 | 154 | 9.2E-64 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 7 | 154 | 53.210949 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_021757399.1 | ubiquitin-conjugating enzyme E2 2-like [Chenopodium quinoa] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YBX0 | E2 ubiquitin-conjugating enzyme OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16942 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026529 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13306, Sbi_jg52542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9296 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34475, Sgl39889 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003605, gene:ENSEOMG00000005805 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0017550, CQ.Regalona.r1.6BG0018710 |
| Arecaceae | Cocos nucifera | 1 | contig69538645G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704264 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0299s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31230 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36405 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.951, evm.TU.LG15.865 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g20020, gene.Posoc03g27170 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-804 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14932 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2421 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.538 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001622 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6175 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1862 |