Basic Information
Locus ID:
gene_16924
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
LYK4
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8848221 | 8850734 | - | gene_16924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 66,092.25 Da | 36.64 | 98.77 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 242 | 269 | 3.17243E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 243 | 287 | 5.0E-4 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 431 | 598 | 1.3E-25 | IPR001245 |
| Pfam | PF01476 | LysM domain | 175 | 221 | 0.073 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 599 | 3.46E-46 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 382 | 479 | 1.8E-14 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 241 | 295 | 2.3E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 480 | 599 | 7.4E-33 | - |
| SMART | SM00257 | LysM_2 | 242 | 287 | 0.44 | IPR018392 |
| SMART | SM00257 | LysM_2 | 174 | 221 | 2.6 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 173 | 220 | 9.699794 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 241 | 286 | 10.659889 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 344 | 599 | 25.008005 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_048501773.1 | lysM domain receptor-like kinase 4 [Beta vulgaris subsp. vulgaris] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9F754 | LysM domain receptor-like kinase 4 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology