Basic Information
Locus ID:
gene_16923
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
LYK4
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8844683 | 8847731 | - | gene_16923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 76,020.00 Da | 39.36 | 87.30 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 261 | 305 | 2.56479E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 441 | 682 | 2.3E-32 | IPR000719 |
| Pfam | PF01476 | LysM domain | 262 | 306 | 2.3E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 195 | 241 | 0.054 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 406 | 683 | 7.02E-57 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 260 | 306 | 3.79E-5 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 390 | 483 | 3.0E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 485 | 689 | 2.6E-48 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 259 | 306 | 1.0E-7 | IPR036779 |
| SMART | SM00257 | LysM_2 | 261 | 306 | 8.9E-6 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 260 | 305 | 12.047474 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 391 | 687 | 29.898369 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 341 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_048501773.1 | lysM domain receptor-like kinase 4 [Beta vulgaris subsp. vulgaris] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9F754 | LysM domain receptor-like kinase 4 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology