Basic Information
Locus ID:
gene_16922
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
LYK4
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8839472 | 8843378 | - | gene_16922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 85,301.02 Da | 39.36 | 93.15 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 188 | 230 | 3.3161E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 635 | 769 | 2.2E-12 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 367 | 621 | 9.8E-41 | IPR000719 |
| Pfam | PF01476 | LysM domain | 188 | 231 | 6.3E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 186 | 231 | 4.45E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 335 | 623 | 4.65E-66 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 634 | 769 | 8.02E-20 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 183 | 238 | 1.3E-7 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 632 | 777 | 3.9E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 422 | 3.4E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 423 | 631 | 4.7E-54 | - |
| SMART | SM00257 | LysM_2 | 186 | 231 | 2.8E-4 | IPR018392 |
| SMART | SM00220 | serkin_6 | 364 | 628 | 3.2E-25 | IPR000719 |
| SMART | SM00257 | LysM_2 | 119 | 166 | 1.4 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 332 | 627 | 33.149189 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 185 | 230 | 11.50085 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 118 | 165 | 10.078226 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 262 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_048501773.1 | lysM domain receptor-like kinase 4 [Beta vulgaris subsp. vulgaris] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9F754 | LysM domain receptor-like kinase 4 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology