Basic Information
Locus ID:
gene_16921
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
LYK4
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8828430 | 8833813 | - | gene_16921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 109,278.64 Da | 41.79 | 89.33 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 720 | 970 | 1.4E-34 | IPR000719 |
| Pfam | PF01476 | LysM domain | 188 | 231 | 0.0017 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 367 | 620 | 1.2E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 336 | 623 | 1.34E-65 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 691 | 971 | 4.21E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 423 | 638 | 8.3E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 682 | 775 | 3.8E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 422 | 3.3E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 776 | 983 | 1.4E-45 | - |
| SMART | SM00257 | LysM_2 | 186 | 231 | 0.32 | IPR018392 |
| SMART | SM00220 | serkin_6 | 712 | 973 | 2.3E-13 | IPR000719 |
| SMART | SM00257 | LysM_2 | 119 | 166 | 1.4 | IPR018392 |
| SMART | SM00220 | serkin_6 | 364 | 628 | 3.6E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 708 | 975 | 27.283579 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 118 | 165 | 10.078226 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 332 | 627 | 33.163326 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 185 | 230 | 9.580657 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 822 | 834 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_048501773.1 | lysM domain receptor-like kinase 4 [Beta vulgaris subsp. vulgaris] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RS38 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology