Basic Information
Locus ID:
gene_16884
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8100785 | 8106617 | - | gene_16884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 86,351.15 Da | 50.34 | 75.05 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 73 | 110 | 3.6E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 344 | 640 | 2.7E-38 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 68 | 112 | 1.48E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 342 | 644 | 1.41E-79 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 337 | 650 | 7.1E-85 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 61 | 113 | 1.0E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 12.103909 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 344 | 643 | 47.07 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 73 | 110 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 345 | 360 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 750 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010681055.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RNB7 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Spinacia oleracea OX=3562 GN=SOVF_052480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology