Basic Information
Locus ID:
gene_1678
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Late embryogenesis abundant protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 44128373 | 44133648 | - | gene_1678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 37,539.08 Da | 54.06 | 77.55 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03168 | Late embryogenesis abundant protein | 89 | 188 | 1.7E-7 | IPR004864 |
| Pfam | PF12678 | RING-H2 zinc finger domain | 283 | 312 | 7.0E-9 | IPR024766 |
| SUPERFAMILY | SSF117070 | LEA14-like | 49 | 122 | 4.18E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 316 | 2.72E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 316 | 4.7E-12 | IPR013083 |
| Gene3D | G3DSA:2.60.40.1820 | - | 52 | 186 | 4.4E-5 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 289 | 312 | 8.579733 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46150.1 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family. | 0 |
| RefSeq | XP_021849051.1 | uncharacterized protein LOC110788708 [Spinacia oleracea] | 0 |
| O82353 | RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KZF8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology