halophFGD

Basic Information

Locus ID: gene_16746

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box protein At3g07870-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_4_Chr_5	5685953	5687648	-	gene_16746

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.63	48,856.83 Da	53.62	84.87	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	8	47	6.9E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	5	86	1.13E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	47	1.1E-5	-
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	137	346	7.3E-18	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47790.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_022888940.1	F-box/kelch-repeat protein At3g23880-like [Olea europaea var. sylvestris]
Swiss-Prot	Q9FZF8	Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1
TrEMBL	A0A8S0U5X0	F-box kelch-repeat At3g23880-like OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A114045 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	8	gene_10790, gene_15721, gene_16719, gene_16720, gene_16746 ... gene_1909, gene_23270, gene_23976