Basic Information
Locus ID:
gene_16738
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 5494452 | 5501351 | - | gene_16738 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 70,016.11 Da | 40.84 | 87.18 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 2.28141E-44 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 7.2E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 208 | 462 | 2.4E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 4.16E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 10 | 121 | 1.7E-10 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 208 | 486 | 89.051529 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.558129 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 530 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010679621.1 | BTB/POZ domain-containing protein NPY4 [Beta vulgaris subsp. vulgaris] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N4D8 | BTB/POZ domain-containing protein NPY4 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology