Basic Information
Locus ID:
gene_16616
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 3359538 | 3364482 | - | gene_16616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 53,119.61 Da | 35.16 | 88.50 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 61 | 1.5E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 106 | 1.26E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 62 | 2.2E-6 | - |
| SMART | SM00256 | fbox_2 | 23 | 64 | 6.3E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 128 | 301 | 4.2E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021835112.1 | F-box/kelch-repeat protein At3g06240-like [Spinacia oleracea] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9Q8G6 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_207960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16616 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018633, Ah018634, Ah034289 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg35729 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3693, Seu_jg3694 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020056, GOSA_00020058, GOSA_00020059 |
| Amaranthaceae | Suaeda glauca | 24 | Sgl01351, Sgl01352, Sgl01353, Sgl01354, Sgl01355, Sgl06434 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000028850, gene:ENSEOMG00000030685 ... |
| Amaranthaceae | Chenopodium quinoa | 9 | CQ.Regalona.r1.2BG0014960, CQ.Regalona.r1.3AG0004980 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613212 |