Basic Information
Locus ID:
gene_16602
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 3054387 | 3061922 | - | gene_16602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 42,960.69 Da | 59.53 | 78.93 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.20832E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 162 | 211 | 3.42015E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 361 | 396 | 6.7E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 169 | 206 | 2.5E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.0E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 281 | 336 | 1.9E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 338 | 408 | 8.03E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 167 | 219 | 3.71E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 278 | 342 | 1.83E-21 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 86 | 6.22E-23 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 353 | 400 | 7.4E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-27 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 271 | 337 | 5.0E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 161 | 211 | 4.7E-22 | - |
| SMART | SM00727 | CBM | 279 | 322 | 1.3E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 168 | 208 | 3.2E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 361 | 398 | 1.2E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.3E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 403 | 1.3E-113 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 166 | 209 | 12.691477 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 358 | 399 | 13.896332 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.978138 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 307 | 329 | 8.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 387 | 402 | 8.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 372 | 386 | 8.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 371 | 8.5E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 253 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010692904.1 | ubiquitin receptor RAD23d isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LAU3 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology