Basic Information
Locus ID:
gene_16565
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Triosephosphate isomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 2400753 | 2405370 | - | gene_16565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 26,915.57 Da | 17.10 | 97.47 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00311 | TIM | 5 | 246 | 9.06177E-129 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 6 | 245 | 3.6E-88 | IPR000652 |
| SUPERFAMILY | SSF51351 | Triosephosphate isomerase (TIM) | 3 | 247 | 1.03E-93 | IPR035990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 253 | 3.4E-116 | IPR013785 |
| TIGRFAM | TIGR00419 | tim: triose-phosphate isomerase | 6 | 240 | 4.3E-95 | IPR000652 |
| ProSiteProfiles | PS51440 | Triosephosphate isomerase (TIM) family profile. | 4 | 247 | 81.78624 | IPR000652 |
| ProSitePatterns | PS00171 | Triosephosphate isomerase active site. | 164 | 174 | - | IPR020861 |
| Hamap | MF_00147_B | Triosephosphate isomerase [tpiA]. | 3 | 247 | 57.850586 | IPR022896 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55440.1 | triosephosphate isomerase. Encodes triosephosphate isomerase. | 0 |
| RefSeq | XP_021768991.1 | triosephosphate isomerase, cytosolic-like [Chenopodium quinoa] | 0 |
| P48494 | Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica OX=39947 GN=TPI PE=1 SV=3 | 0 | |
| TrEMBL | A0A803N2M1 | Triosephosphate isomerase, cytosolic OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology