Basic Information
Locus ID:
gene_16434
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 400539 | 417412 | - | gene_16434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 150,509.05 Da | 36.18 | 82.73 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 1024 | 1123 | 4.88092E-32 | IPR029413 |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 37 | 269 | 3.53437E-81 | IPR001220 |
| CDD | cd10317 | RGL4_C | 1135 | 1323 | 8.27832E-53 | - |
| CDD | cd14066 | STKc_IRAK | 354 | 617 | 1.01853E-93 | - |
| CDD | cd10320 | RGL4_N | 702 | 990 | 1.74483E-68 | - |
| Pfam | PF00139 | Legume lectin domain | 38 | 272 | 5.0E-68 | IPR001220 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 699 | 891 | 7.1E-73 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1133 | 1322 | 3.2E-52 | IPR029411 |
| Pfam | PF00069 | Protein kinase domain | 349 | 615 | 2.9E-48 | IPR000719 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 1047 | 1120 | 3.5E-22 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 700 | 984 | 8.47E-8 | IPR011013 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 332 | 619 | 1.48E-82 | IPR011009 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1130 | 1323 | 6.8E-47 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 1062 | 1120 | 1.47E-6 | IPR013784 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 35 | 271 | 1.21E-61 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 34 | 286 | 5.6E-67 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 425 | 626 | 9.4E-63 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 333 | 424 | 6.3E-32 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 1131 | 1323 | 8.2E-15 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 695 | 994 | 6.0E-15 | IPR014718 |
| SMART | SM00220 | serkin_6 | 348 | 624 | 4.3E-47 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 348 | 624 | 39.424686 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 468 | 480 | - | IPR008271 |
| ProSitePatterns | PS00308 | Legume lectins alpha-chain signature. | 239 | 248 | - | IPR000985 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 354 | 378 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021853123.1 | probable rhamnogalacturonate lyase B isoform X2 [Spinacia oleracea] | 0 |
| Q9LXA5 | L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology