Basic Information
Locus ID:
gene_16432
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 388727 | 393136 | - | gene_16432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 74,339.43 Da | 25.32 | 80.98 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 360 | 456 | 2.47619E-34 | IPR029413 |
| CDD | cd10317 | RGL4_C | 468 | 655 | 7.28345E-55 | - |
| CDD | cd10320 | RGL4_N | 40 | 326 | 2.48579E-74 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 229 | 3.6E-61 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 466 | 654 | 8.5E-53 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 381 | 453 | 2.5E-25 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 357 | 454 | 3.53E-11 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 464 | 655 | 1.02E-44 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 45 | 320 | 3.56E-11 | IPR011013 |
| Gene3D | G3DSA:2.60.120.260 | - | 463 | 655 | 2.0E-18 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 357 | 454 | 5.1E-11 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 41 | 330 | 2.3E-13 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_021731282.1 | uncharacterized protein LOC110698188 [Chenopodium quinoa] | 0 |
| Q8RJP2 | Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=rhiE PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MAW7 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology