Basic Information
Locus ID:
gene_16421
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 215873 | 237564 | - | gene_16421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 104,157.35 Da | 50.51 | 92.10 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 454 | 936 | 1.27434E-112 | IPR044644 |
| Pfam | PF01554 | MatE | 750 | 895 | 4.6E-12 | IPR002528 |
| Pfam | PF01554 | MatE | 597 | 688 | 4.8E-12 | IPR002528 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 453 | 916 | 3.4E-122 | IPR002528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 572 | - | - |
| Coils | Coil | Coil | 68 | 88 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51340.1 | MATE efflux family protein. | 0 |
| RefSeq | XP_021735990.1 | protein DETOXIFICATION 43-like [Chenopodium quinoa] | 0 |
| Q9SYD6 | Protein DETOXIFICATION 42 OS=Arabidopsis thaliana OX=3702 GN=DTX42 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QQS7 | Protein DETOXIFICATION OS=Spinacia oleracea OX=3562 GN=SOVF_157050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology