Basic Information
Locus ID:
gene_16397
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 2829963 | 2831953 | - | gene_16397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 54,592.39 Da | 59.14 | 68.63 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 102 | 407 | 1.24401E-146 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 103 | 406 | 1.4E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 15 | 52 | 3.8E-11 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 11 | 57 | 1.74E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 99 | 414 | 1.0E-84 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 99 | 418 | 3.5E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 6 | 58 | 6.2E-13 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 15 | 52 | 12.259467 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 103 | 409 | 47.971237 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 104 | 119 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021762112.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9A2N9 | Ubiquitinyl hydrolase 1 (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology