Basic Information
Locus ID:
gene_1635
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
LYK4
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 67862062 | 67871044 | - | gene_1635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 68,297.51 Da | 47.83 | 88.42 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 121 | 166 | 0.00418972 | IPR018392 |
| CDD | cd00118 | LysM | 187 | 230 | 3.07073E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 188 | 231 | 1.8E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 367 | 612 | 1.8E-36 | IPR001245 |
| Pfam | PF01476 | LysM domain | 121 | 167 | 0.0047 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 324 | 612 | 2.11E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 412 | 615 | 2.2E-50 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 114 | 179 | 1.2E-7 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 186 | 243 | 1.4E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 316 | 410 | 1.1E-16 | - |
| SMART | SM00257 | LysM_2 | 120 | 167 | 0.05 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 231 | 1.7E-5 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 230 | 11.507857 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 119 | 166 | 10.750994 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 320 | 615 | 30.350658 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_010254977.1 | PREDICTED: lysM domain receptor-like kinase 4 [Nelumbo nucifera] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8A1K6 | lysM domain receptor-like kinase 4 OS=Nelumbo nucifera OX=4432 GN=LOC104595785 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology