Basic Information
Locus ID:
gene_1632
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 66705327 | 66755619 | - | gene_1632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 64,668.90 Da | 47.30 | 94.07 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 260 | 552 | 1.45746E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 509 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 515 | 552 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 340 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 294 | 2.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 552 | 1.26E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 249 | 516 | 2.1E-55 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 569 | 2.1E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 424 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 510 | 0.72 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 150 | 7.1E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 301 | 340 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 513 | 553 | 2.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 464 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 2.0E-7 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.839518 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 296 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 308 | 349 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 308 | 345 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 520 | 555 | 11.761044 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 150 | 9.564058 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 555 | 14.217871 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 369 | 383 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 540 | 554 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 3.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_043688903.1 | WD repeat-containing protein 26 homolog [Telopea speciosissima] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z6X1 | Putative WD repeat-containing protein 26-like OS=Davidia involucrata OX=16924 GN=Din_008234 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology