halophFGD

Basic Information

Locus ID: gene_16244

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_3_Chr_1	45599811	45601647	+	gene_16244

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.00	13,542.68 Da	47.43	107.81	0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00478	IMP dehydrogenase / GMP reductase domain	68	113	1.8E-15	IPR001093
SUPERFAMILY	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)	66	112	1.03E-11	-
Gene3D	G3DSA:3.20.20.70	Aldolase class I	53	119	2.3E-17	IPR013785

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity)

KEGG Pathway

KO Term:

K00088 (IMP dehydrogenase [EC:1.1.1.205])

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00983 (Drug metabolism - other enzymes) map00983 (Drug metabolism - other enzymes) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00050 (Guanine ribonucleotide biosynthesis, IMP => GDP,GTP)

Reaction:

R01130 (IMP + NAD+ + H2O <=> Xanthosine 5'-phosphate + NADH + H+) R08240 (6-Thioinosine-5'-monophosphate + NAD+ + H2O <=> 6-Thioxanthine 5'-monophosphate + NADH + H+)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79470.1	Aldolase-type TIM barrel family protein.
RefSeq	XP_021866637.1	inosine-5'-monophosphate dehydrogenase 2-like [Spinacia oleracea]
Swiss-Prot	P47996	Inosine-5'-monophosphate dehydrogenase 1 OS=Arabidopsis thaliana OX=3702 GN=IMPDH PE=2 SV=1
TrEMBL	A0A7C8ZP57	IMP dehydrogenase (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16244, gene_21745, gene_21763, gene_26530
Amaranthaceae	Atriplex hortensis	4	Ah008814, Ah008815, Ah008816, Ah008817
Amaranthaceae	Beta vulgaris	2	BVRB_4g076820, BVRB_9g224050
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg50516
Amaranthaceae	Suaeda glauca	12	Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... Sgl28514, Sgl28515, Sgl28516, Sgl28518, Sgl28692, Sgl28693
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... CQ.Regalona.r1.3BG0013420, CQ.Regalona.r1.3BG0013430, CQ.Regalona.r1.3BG0026380, CQ.Regalona.r1.7BG0005540
Portulacaceae	Portulaca oleracea	10	evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... evm.TU.LG02.1513, evm.TU.LG02.1514, evm.TU.LG02.1515, evm.TU.LG02.1516, evm.TU.LG09.490, evm.TU.LG09.492, evm.TU.LG09.493