Basic Information
Locus ID:
gene_16209
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44922773 | 44925048 | + | gene_16209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 52,570.34 Da | 57.18 | 94.97 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 420 | 462 | 2.18566E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 131 | 195 | 6.9E-9 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 418 | 462 | 2.4E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 70 | 115 | 2.2E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 413 | 464 | 3.24E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 118 | 7.66E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 118 | 3.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 381 | 466 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 420 | 461 | 3.6E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 72 | 115 | 8.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 116 | 11.545086 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 420 | 462 | 11.441815 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021729156.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A8B8PCC4 | putative RING-H2 finger protein ATL21A OS=Rhodamnia argentea OX=178133 GN=LOC115742273 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology