Basic Information
Locus ID:
gene_16204
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein At3g06240-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44811496 | 44817359 | + | gene_16204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 90,540.75 Da | 34.42 | 90.71 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 103 | 6.41E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 54 | 3.2E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 140 | 370 | 9.0E-21 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 553 | 755 | 3.0E-19 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_010671904.2 | F-box protein CPR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DXS7 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16204 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2494, evm.TU.LG01.2495, evm.TU.LG01.2496 ... |