Basic Information
Locus ID:
gene_16187
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44529149 | 44541134 | + | gene_16187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 37,397.03 Da | 45.88 | 82.26 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 23 | 151 | 1.74974E-68 | IPR000608 |
| CDD | cd00195 | UBCc | 187 | 326 | 5.30145E-74 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 25 | 152 | 4.1E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 189 | 325 | 7.8E-53 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 176 | 331 | 3.54E-67 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 19 | 152 | 2.1E-60 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 179 | 332 | 2.4E-75 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 17 | 160 | 4.2E-67 | IPR016135 |
| SMART | SM00212 | ubc_7 | 188 | 331 | 1.8E-81 | - |
| SMART | SM00212 | ubc_7 | 24 | 163 | 1.0E-68 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 185 | 331 | 62.055309 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 21 | 170 | 56.38364 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 258 | 273 | - | IPR023313 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 94 | 109 | - | IPR023313 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.1 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_016700561.1 | ubiquitin-conjugating enzyme E2 8 isoform X1 [Gossypium hirsutum] | 0 |
| Q94F47 | Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J6GBY2 | UBC core domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_024768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology