Basic Information
Locus ID:
gene_16160
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44089275 | 44092942 | + | gene_16160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 80,832.92 Da | 38.66 | 83.07 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 19 | 207 | 7.70345E-110 | - |
| Pfam | PF00183 | Hsp90 protein | 189 | 699 | 8.0E-238 | IPR001404 |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 32 | 186 | 6.2E-14 | IPR003594 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 10 | 218 | 7.19E-75 | IPR036890 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 547 | 669 | 6.28E-39 | IPR037196 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 268 | 523 | 1.14E-109 | IPR020568 |
| Gene3D | G3DSA:3.30.565.10 | - | 8 | 233 | 1.4E-96 | IPR036890 |
| Gene3D | G3DSA:3.40.50.11260 | - | 436 | 522 | 1.2E-42 | - |
| Gene3D | G3DSA:3.30.230.80 | - | 267 | 435 | 9.8E-87 | - |
| Gene3D | G3DSA:1.20.120.790 | - | 523 | 674 | 1.8E-66 | IPR037196 |
| SMART | SM00387 | HKATPase_4 | 32 | 187 | 3.4E-9 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 2 | 703 | 1.3E-262 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 30 | 39 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 175 | 192 | 5.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 31 | 53 | 5.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 98 | 115 | 5.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 80 | 97 | 5.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 123 | 145 | 5.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 10 | 30 | 5.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 193 | 211 | 5.9E-84 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 7 | 670 | 27.282551 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 242 | - | - |
| Coils | Coil | Coil | 528 | 548 | - | - |
| Coils | Coil | Coil | 232 | 259 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52640.1 | heat shock protein 90.1. Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. | 0 |
| RefSeq | XP_010671625.2 | heat shock protein 83 [Beta vulgaris subsp. vulgaris] | 0 |
| P51819 | Heat shock protein 83 OS=Ipomoea nil OX=35883 GN=HSP83A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HRZ0 | Molecular chaperone (HSP90 family) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07020 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology