Basic Information
Locus ID:
gene_16133
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 74544358 | 74619755 | + | gene_16133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 78,732.39 Da | 40.83 | 89.34 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 401 | 4.59996E-60 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 2.18474E-128 | - |
| Pfam | PF16124 | RecQ zinc-binding | 404 | 460 | 4.5E-12 | IPR032284 |
| Pfam | PF09382 | RQC domain | 474 | 568 | 5.1E-7 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 259 | 5.5E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 591 | 651 | 7.2E-10 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 580 | 654 | 1.02E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 407 | 6.25E-48 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 586 | 653 | 1.4E-11 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 465 | 565 | 8.2E-26 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 280 | 2.1E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 355 | 1.9E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 356 | 462 | 1.1E-34 | IPR027417 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 4.2E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 327 | 392 | 1.6E-11 | IPR001650 |
| SMART | SM00956 | RQC_2 | 469 | 566 | 7.7E-4 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 498 | 5.1E-147 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 23.656036 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 268 | 431 | 10.324692 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 582 | 661 | 12.8717 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 680 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021862388.1 | mediator of RNA polymerase II transcription subunit 34 [Spinacia oleracea] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7T9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_097190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology