Basic Information
Locus ID:
gene_16110
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 43219368 | 43241760 | + | gene_16110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 53,862.14 Da | 48.18 | 80.74 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 9.0E-14 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 112 | 198 | 6.5E-9 | IPR020683 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 213 | 254 | 2.9E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 306 | 368 | 1.02E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 267 | 2.88E-49 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 378 | 6.8E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 140 | 2.5E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 146 | 263 | 1.8E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 213 | 245 | 2.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 170 | 199 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 2.6 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 362 | 9.140347 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 170 | 199 | 10.205854 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.277257 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 213 | 239 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.29725 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 170 | 202 | 10.87314 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 213 | 245 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 327 | 336 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 475 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010693474.1 | E3 ubiquitin-protein ligase XBAT33 [Beta vulgaris subsp. vulgaris] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RE20 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_083260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology