Basic Information
Locus ID:
gene_16085
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 71965168 | 72005806 | + | gene_16085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 131,574.09 Da | 42.77 | 77.45 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 60 | 183 | 5.38657E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 201 | 529 | 1.48109E-165 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 203 | 524 | 8.2E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 628 | 880 | 4.4E-77 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 890 | 1100 | 3.9E-55 | IPR029346 |
| Pfam | PF00917 | MATH domain | 66 | 185 | 8.5E-18 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 57 | 191 | 2.94E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 198 | 553 | 6.87E-96 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 55 | 199 | 7.8E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 806 | 903 | 4.3E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 200 | 528 | 2.2E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 689 | 805 | 1.4E-41 | - |
| SMART | SM00061 | math_3 | 60 | 164 | 1.9E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 58 | 183 | 38.238457 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 203 | 527 | 39.531052 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 204 | 219 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 443 | 460 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 53 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_010677617.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CRZ2 | ubiquitinyl hydrolase 1 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology