Basic Information
Locus ID:
gene_15953
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 40139170 | 40143388 | + | gene_15953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 42,000.34 Da | 29.28 | 104.02 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 91 | 143 | 7.47192E-7 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 157 | 225 | 1.19704E-10 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 234 | 301 | 1.93477E-6 | - |
| Pfam | PF00240 | Ubiquitin family | 237 | 301 | 9.1E-8 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 86 | 146 | 4.8E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 159 | 228 | 1.9E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 230 | 302 | 7.88E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 77 | 148 | 3.38E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 154 | 231 | 1.33E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 304 | 371 | 3.15E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 154 | 229 | 7.8E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 230 | 302 | 8.0E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 303 | 373 | 7.0E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 79 | 150 | 6.2E-13 | - |
| SMART | SM00213 | ubq_7 | 232 | 303 | 2.2 | IPR000626 |
| SMART | SM00213 | ubq_7 | 304 | 373 | 1.6 | IPR000626 |
| SMART | SM00213 | ubq_7 | 155 | 227 | 2.1E-8 | IPR000626 |
| SMART | SM00213 | ubq_7 | 79 | 148 | 2.0E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 143 | 231 | 15.42708 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 304 | 372 | 9.395295 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 232 | 301 | 10.614717 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 79 | 147 | 15.66661 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 208 | 229 | 9.4E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 187 | 207 | 9.4E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 166 | 186 | 9.4E-5 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_048497256.1 | polyubiquitin [Beta vulgaris subsp. vulgaris] | 0 |
| P0CG53 | Polyubiquitin-B OS=Bos taurus OX=9913 GN=UBB PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7GR34 | Ubiquitin OS=Camellia sinensis OX=4442 GN=HYC85_019536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |